About Me, Misc, Teaching

Scientific web apps

Recently I've been thinking about developing scientific web apps. I wanted to discuss my experiences with making web apps, and an overview of what I've made. A more technical/development discussion will follow in a subsequent post. I was introduced to R Shiny at a gerrymandering workshop a few years ago. Since then, I've created a… Continue reading Scientific web apps


Why we should stop publishing in open-access journals with article processing charges

Interesting argument that many researchers are essentially ‘forced’ to publish in non OA journals (so, at the very least not appropriate as a yardstick to gauge commitment to open science). In my field, I’m aware of Biomathematics as gold-standard OA (no APC and open access society journal), but haven’t heard of any others.

AESOP Young Academics

Reading time: 4 minutes

Guest author: Francesco Chiodelli (University of Turin)

In recent years, a new generation of academic journals has emerged and grown rapidly. It is a particular type of open-access journal with an article processing charge [hereafter: APC journal] . An APC journal is a scientific journal that requires authors to pay a fee to publish their article after it has been accepted. Such fees are usually quite high (ranging from around 1,000 Euros per article in most cases to over 3,000 Euros in some instances). The new generation of APC journals is not constituted by ‘traditional predatory journals’, that is to say a sort of fake-scientific-journals, characterized by false or misleading information, deviation from good editorial practices, and a lack of transparency and a serious peer-review process. This new generation consists of journals that appear to be more serious and on paper seem to respect…

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Introduction to Approximate Bayesian Computation (ABC)

Darren Wilkinson's blog

Many of the posts in this blog have been concerned with using MCMC based methods for Bayesian inference. These methods are typically “exact” in the sense that they have the exact posterior distribution of interest as their target equilibrium distribution, but are obviously “approximate”, in that for any finite amount of computing time, we can only generate a finite sample of correlated realisations from a Markov chain that we hope is close to equilibrium.

Approximate Bayesian Computation (ABC) methods go a step further, and generate samples from a distribution which is not the true posterior distribution of interest, but a distribution which is hoped to be close to the real posterior distribution of interest. There are many variants on ABC, and I won’t get around to explaining all of them in this blog. The wikipedia page on ABC is a good starting point for further reading. In this post I’ll…

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About Me, Misc, Statistics

Why I got a statistics masters during my PhD

In this post I talk about my motivation to complete a degree in statistics during my PhD, and all the failures that went into that decision.


Happy New Year!

I hope you had a nice end to 2020, however symbolic that may be. I love making new year's resolutions, although I am over-ambitious, as usual. (I'm still checking things off from 2018, and that's just because its the oldest list I have). 2020 wasn't incredibly productive, but I did accomplish a few things. I… Continue reading Happy New Year!

About Me, Misc, Philosophy

Returning to my pre-grad school interests

Grad school sucked up a lot of my time and energy. At one year from my defense, and 8 months from graduation, I'm ready to get back into some of the things that made me happy. Music Pre grad school, and even pre college, I played violin, clarinet, and piano pretty regularly. I've been practicing,… Continue reading Returning to my pre-grad school interests

Math Modeling, Misc, Young Modelers

Online Community for Modelers: Modeling and Beyond

MODELERS FACE A VARIETY OF CHALLENGES. Although the usefulness and appreciation of modeling as a field is always increasing, modelers today often experience a few setbacks. We often teach ourselves difficult concepts in an effort to innovate along any of the fields we operate in (coding, math, biology, statistics). We may complete our degrees in… Continue reading Online Community for Modelers: Modeling and Beyond

Misc, Opinion

Four Tips on Dealing with Rejection

Awhile back I wrote about how I obsessively applied to every opportunity that I was even remotely eligible for and tracked my success and failures over the years. I know that part of the problem with applying for things comes from a disbelief that you could actually be selected for something. That might come from… Continue reading Four Tips on Dealing with Rejection

Data analysis, Misc, Opinion

Application Statistics: PhD Student to Postdoc

In 2017 I was halfway through my PhD and frustrated with the opportunities available to me at my home institution. Conferences were rarely held even far away, and no travel funding. I thought even if I did apply, I would probably get rejected anyway. Apparently that mentality is common in women. So I started applying… Continue reading Application Statistics: PhD Student to Postdoc

Misc, Opinion

Preparing for grad school

You'll always worry about being smart enough, clever enough, reading and writing enough. You can always do remedial classes (I did and wow is it easier than when I was a freshman). Here's some things that might help you prepare for the hard parts of grad school. Therapist Absolutely necessary. Have you seen the data… Continue reading Preparing for grad school